Members of GSC working to complete example MIGS/MIMS report in ISA-Tab format

The RSBI working group has proposed an “Investigation Study Assay” paradigm for the modularization of minimum information checklists to accomodate reporting of multi-omic studies. This “ISA” construct is now also recognized by MIBBI.
The GSC’s MIGS checklist was specifically revised to also reflect the ISA structure to help in its modularization – some fields describe the [...]

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GSC Special Issue of OMICS – Community Consultation

Dawn Field, Susanna-Assunta Sansone and George Garrity have been asked by the OMICS Editor and Chief Eugene Kolker to produce a special issue of OMICS based on the 5th GSC Workshop.
A community consultation has now started with the posting of the first paper on the GSC wiki. special issue of OMICS Wiki page Authors are [...]

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GSC represented at MGED workshop on standardizing UHTS data, 17-18 March 2008

The Microarray and Gene Expression (MGED) Society, is calling for an effort to develop standards for exchanging ultra-high throughput sequencing (UHTS) data.
Dawn Field will be attending the workshop to represent the GSC.
Guy Cochrane will be there to represent the EBI Short Read Trace Archive.
Susanna-Assunta Sansone, a member of the MGED Board, will also be there.
UPDATED: [...]

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GSC Poster at Asia Pacific Bioinformatics Conference (APBC) 2008 : 14-17 January, Kyoto, Japan

A poster will be presented at the Asia Pacific Bioinformatics Conference 2008 describing GenCat and the Genome Catalogue, two products of the Genomic Standards Consortium (GSC). If you are attending APBC 2008 and are interested in the work of the GSC, please contact Tanya Gray at tgra at ceh.ac.uk.
About the GSC:
The Genomic Standards Consortium [...]

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Nature Biotech paper – revised MIGS/MIMS checklist now available

At the recent Genomic Standards Consortium (GSC) workshop, George Garrity led discussions to review and produce a final version of the MIGS/MIMS checklist that will be included in the MIGS paper to be published in Nature Biotechnology in February 2008.
The revised version of the MIGS/MIMS checklist, together with comments recorded during the GSC workshop, are [...]

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A 2nd special issue of OMICS to be developed by the GSC based on the 5th GSC Workshop

Dawn Field and Susanna-Assunta Sansone guest edited a special issue of the journal OMICS on data standards as an output of the 2nd GSC workshop. There were 22 invited papers including 5 in the area of standardization of genomic data (See: Special_Issue_of_OMICS).
An overview of the issue and its goals is captured in the foreword: [...]

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GenCat – Generic XML data catalogue – latest release

The latest release of GenCat is available to download from the project SourceForge SVN repository:
gencat release-1.1
GenCat uses the latest technology including Orbeon Forms, eXist, AJAX, XForms and XML Pipeline Language (XPL/XPROC), and provides a generic XML data catalogue with input forms generated on-the-fly from XML schema files, to capture schema-compliant XML instances.
GenCat has been implemented [...]

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Genomic Standards Consortium (GSC) 5th Workshop – slides

Further to the 5th Genomic Standards Consortium (GSC) workshop, slides are available to download from the GSC wiki:
agenda and presentations

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Standardising the Description of 16S Sequences with MIGS/MIMS

At the 5th Genomic Standards Consortium (GSC) workshop held at the EBI on 12-14th December 2007, discussions led to a proposal to standardise the description of 16S sequences using the GSC community-led standard called Minimum Information about a Genome Sequence/ Metagenome Sample (MIGS/MIMS).
MIGS/MIMS defines descriptors that can assist in the capture of a rich set [...]

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5th GSC Workshop

The 5th GSC Workshop is underway. The workshop will run from 12-14th December, and is hosted at the EBI in Hinxton. The GSC wiki will be updated during the workshop. For further information visit
http://gensc.org/gc_wiki/index.php/5th_GSC_Workshop

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