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Archive for the ‘gcat’ Category

GSC Poster at Asia Pacific Bioinformatics Conference (APBC) 2008 : 14-17 January, Kyoto, Japan

Posted in APBC, CEH Oxford, Genome Catalogue, MIGS, MIGS/MIMS, MIMS, XForms, XSD, bioinformatics, exist, gcat, gencat, genome, genomic standards consortium, genomics, gsc, metagenome, metagenomics, orbeon, standards, xml, xml schema on January 7, 2008 | Leave a Comment »

A poster will be presented at the Asia Pacific Bioinformatics Conference 2008 describing GenCat and the Genome Catalogue, two products of the Genomic Standards Consortium (GSC). If you are attending APBC 2008 and are interested in the work of the GSC, please contact Tanya Gray at tgra at ceh.ac.uk.
About the GSC:
The Genomic Standards Consortium [...]

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A 2nd special issue of OMICS to be developed by the GSC based on the 5th GSC Workshop

Posted in 16s, CAMERA, CEH Oxford, GCDML, GenBank, INSDC, MIGS, MIGS/MIMS, MIMS, bioinformatics, ebi, gcat, gencat, genome, genomic standards consortium, genomics, gsc, metagenome, metagenomics, omics, science, standards, xml, xml schema on December 20, 2007 | 1 Comment »

Dawn Field and Susanna-Assunta Sansone guest edited a special issue of the journal OMICS on data standards as an output of the 2nd GSC workshop. There were 22 invited papers including 5 in the area of standardization of genomic data (See: Special_Issue_of_OMICS).
An overview of the issue and its goals is captured in the foreword: [...]

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GenCat – Generic XML data catalogue – latest release

Posted in MIGS, MIGS/MIMS, MIMS, XForms, XSD, ajax, exist, gcat, gencat, orbeon, xml, xml schema on December 19, 2007 | Leave a Comment »

The latest release of GenCat is available to download from the project SourceForge SVN repository:
gencat release-1.1
GenCat uses the latest technology including Orbeon Forms, eXist, AJAX, XForms and XML Pipeline Language (XPL/XPROC), and provides a generic XML data catalogue with input forms generated on-the-fly from XML schema files, to capture schema-compliant XML instances.
GenCat has been implemented [...]

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eGenomics III – meeting report published

Posted in Biology, MIGS, MIGS/MIMS, MIMS, NIEeS, bioinformatics, gcat, genome, genomic standards consortium, genomics, gsc, metagenome, metagenomics, standards on July 12, 2007 | 1 Comment »

A meeting report summarizing the proceedings of the “eGenomics: Cataloguing our Complete Genome Collection III” workshop held September 11–13, 2006, at the National Institute for Environmental eScience (NIEeS), Cambridge, United Kingdom, is now available:
download meeting report

Comparative and Functional Genomics
Volume 2007 (2007), Article ID 47304, 7 [...]

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The Macaque Genome

Posted in Biology, gcat, genome, genomic standards consortium, genomics, gsc, mashup on April 14, 2007 | Leave a Comment »

The rhesus macaque monkey (Macaca mulatta) genome was described in the 13th April issue of Science Magazine.
Genome report for Macaca mulatta:
http://darwin.nox.ac.uk/gsc/ gcat/report/002485_GCAT/html
Genome wiki page:
http://darwin.nerc-oxford.ac.uk/gc_wiki/index.php/ /gcat/report/002485_GCAT/html
Genome mashup for macaque genome:
http://darwin.nox.ac.uk/gsc/gcat /mashup?query=macaque%20genome,  returned the following three videos from YouTube:

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The first four GCat identifiers to appear in print

Posted in Biology, bioinformatics, gcat, genome, genomics, gsc, metagenomics on November 8, 2006 | Leave a Comment »

The first four GCat identifiers to appear in print are now online in PloS Biology in a description of four viral metagenomes:
The Marine Viromes of Four Oceanic Regions
Florent E. Angly, Ben Felts, Mya Breitbart, Peter Salamon, Robert A. Edwards, Craig Carlson, Amy M. Chan, Matthew Haynes, Scott Kelley, Hong Liu, Joseph M. Mahaffy, Jennifer E. [...]

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